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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34560207_34564032_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34560207 - 34564032
Intron Length:
3826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGGGA
5'SS Class:
major
3'SS Sequence:
GCTCCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCAAAA
U12 Branch Point Sequence:
GGCTCCCTACCA
Flanking Amino Acid:
LLTVLASAVQVPAVGSGDAE
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
57.5
41.7
Major BPS
47.7
-0.1
1
51
32
Major PPT
69.1
0.43
0.8
61.8
28.8
Minor 5ss
26.9
-2.7
3.7
38.1
46.8
Minor BPS
49.3
-0
2
61.69
44

Associated Gene:

Gene:
TKFC
Ensembl Gene ID:
ENSAPLG00000017549
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028681
34559958 - 34566947
6990