About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34565212_34565355_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34565212 - 34565355
Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGCCCC
5'SS Class:
major
3'SS Sequence:
CCTGCTGCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAG
U12 Branch Point Sequence:
TGAGCTGCCAGT
Flanking Amino Acid:
LADEELLGLIDAETTAMAWP
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
58.5
40.7
Major BPS
46
-0.2
1.6
40.4
42.3
Major PPT
71.1
0.47
0.9
61.1
40.1
Minor 5ss
33.8
-1.8
3
40.2
39.7
Minor BPS
33
-1.2
2.4
48.89
44.5

Associated Gene:

Gene:
TKFC
Ensembl Gene ID:
ENSAPLG00000017549
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036891
34562787 - 34566947
4161
ENSAPLT00000028681
34559958 - 34566947
6990
ENSAPLT00000027437
34562787 - 34566947
4161