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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34565473_34565573_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34565473 - 34565573
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTAACCCGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTAAC
U12 Branch Point Sequence:
CCACCCTTAACC
Flanking Amino Acid:
IVAGAAVRGLERRGVRIARA
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68.8
43.8
Major BPS
64.7
0.37
1.1
67.2
35.2
Major PPT
68.9
0.43
1
62.5
39.3
Minor 5ss
31.9
-2.1
2.9
33
41.8
Minor BPS
70.2
0.61
1.3
68.7
42.5

Associated Gene:

Gene:
TKFC
Ensembl Gene ID:
ENSAPLG00000017549
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028681
34559958 - 34566947
6990
ENSAPLT00000028321
34562787 - 34566947
4161
ENSAPLT00000027437
34562787 - 34566947
4161
ENSAPLT00000036891
34562787 - 34566947
4161