Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34565954_34566346_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34565954 - 34566346

Intron Length:

393

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAGGCGCG

5'SS Class:

major

3'SS Sequence:

CCTGTCCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGGTGAC

U12 Branch Point Sequence:

CGTGGGGTGACG

Flanking Amino Acid:

KRVSAVTKAMGIHGEAGVRR

Intron Amino Acid Position:

119

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.7

0.42

1.2

52.2

43.6

Major BPS

45.4

-0.2

1.4

34.5

43.7

Major PPT

76.5

0.6

0.8

69.5

31.2

Minor 5ss

34.8

-1.7

3.5

38.6

46.6

Minor BPS

32.8

-1.5

2.7

38.2

45.3

Associated Gene:

Gene:

TKFC

Ensembl Gene ID:

ENSAPLG00000017549

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027437

34562787 - 34566947

4161