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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34583109_34584317_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34583109 - 34584317
Intron Length:
1209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTGCATGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
GGCTTCCTAACG
Flanking Amino Acid:
YLAIAPPIIKQSTIVCHNRV
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
77.5
32.9
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
71.1
0.48
0.9
66
34.9
Minor 5ss
34.2
-1.8
2.9
42.1
45
Minor BPS
53
-0
1.8
57.32
43.9

Associated Gene:

Gene:
DDB1
Ensembl Gene ID:
ENSAPLG00000007174
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007508
34574748 - 34592616
17869