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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34584477_34584882_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34584477 - 34584882
Intron Length:
406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTGCAATTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTCCTTGCAAT
Flanking Amino Acid:
KDLRVELLGETSIAECLTYL
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
66.9
40
Major BPS
100
1.24
0.5
100
0
Major PPT
71.4
0.48
1
62.2
43.1
Minor 5ss
36.9
-1.5
3.3
50.4
46.2
Minor BPS
46.5
-0.1
2
67.38
43.2

Associated Gene:

Gene:
DDB1
Ensembl Gene ID:
ENSAPLG00000007174
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007508
34574748 - 34592616
17869