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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34586149_34586311_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34586149 - 34586311
Intron Length:
163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCTC
5'SS Class:
major
3'SS Sequence:
TCTTTCTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATGTAT
U12 Branch Point Sequence:
TGGCTCCGAGCA
Flanking Amino Acid:
GNVAHQQLIQITSASVRLVS
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
69.7
40.9
Major BPS
48.4
-0.1
1.5
49.4
46
Major PPT
85.9
0.81
0.6
84.7
23
Minor 5ss
35.4
-1.7
3.4
50.6
45.9
Minor BPS
41.7
-0.6
1.9
51.31
39.6

Associated Gene:

Gene:
DDB1
Ensembl Gene ID:
ENSAPLG00000007174
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007508
34574748 - 34592616
17869