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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34586748_34586835_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34586748 - 34586835
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGCTC
5'SS Class:
major
3'SS Sequence:
CTGTTCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGACAT
U12 Branch Point Sequence:
GTGACATCAGCC
Flanking Amino Acid:
ELLHKEMLGGEIIPRSILMT
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.9
38.9
Major BPS
49.9
-0
1.4
60.7
45.9
Major PPT
79.9
0.67
0.8
73.8
31.3
Minor 5ss
33.9
-1.8
3.7
49.6
47
Minor BPS
43.7
-0.5
2
54.01
43

Associated Gene:

Gene:
DDB1
Ensembl Gene ID:
ENSAPLG00000007174
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007508
34574748 - 34592616
17869