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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34587508_34587976_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34587508 - 34587976
Intron Length:
469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCTGTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTACAA
U12 Branch Point Sequence:
TCCTCCTGTACA
Flanking Amino Acid:
CPLNSDGYPDSLALANNSTL
Intron Amino Acid Position:
605

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
61.2
0.28
1.1
70.6
34.3
Major PPT
76.8
0.6
0.9
71.5
33
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
57.5
0.23
1.9
68.02
44.1

Associated Gene:

Gene:
DDB1
Ensembl Gene ID:
ENSAPLG00000007174
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007508
34574748 - 34592616
17869