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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34588073_34588328_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34588073 - 34588328
Intron Length:
256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TGCTGCTCACAC
Flanking Amino Acid:
IRTVPLYESPRKICYQEVSQ
Intron Amino Acid Position:
637

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
65
42.7
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
82.4
0.73
0.7
76.8
25.2
Minor 5ss
31.8
-2.1
3
38.9
46.2
Minor BPS
42
-0.6
2.2
52.41
44.6

Associated Gene:

Gene:
DDB1
Ensembl Gene ID:
ENSAPLG00000007174
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007508
34574748 - 34592616
17869