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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34590096_34590251_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34590096 - 34590251
Intron Length:
156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGACTC
5'SS Class:
major
3'SS Sequence:
TCCCTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTTGTTATAGCT
Flanking Amino Acid:
GKLLASINSTVRLYEWTAEK
Intron Amino Acid Position:
803

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
61.1
43.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
82.8
0.74
0.7
80.5
24.8
Minor 5ss
35.6
-1.6
3.5
51.7
45.1
Minor BPS
49.8
0.07
1.9
75.99
41.1

Associated Gene:

Gene:
DDB1
Ensembl Gene ID:
ENSAPLG00000007174
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007508
34574748 - 34592616
17869