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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34591218_34591427_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34591218 - 34591427
Intron Length:
210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCTGG
5'SS Class:
major
3'SS Sequence:
CTTTGGGTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
ACAGACTGAGCA
Flanking Amino Acid:
AFNLFVCQKDSAATTDEERQ
Intron Amino Acid Position:
896

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.1
56.7
45
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
76.7
0.6
1
72.6
42.4
Minor 5ss
36.4
-1.5
3.2
46.4
49
Minor BPS
42.8
-0.5
1.8
48.72
41.3

Associated Gene:

Gene:
DDB1
Ensembl Gene ID:
ENSAPLG00000007174
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007508
34574748 - 34592616
17869