Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34597362_34601958_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

34597362 - 34601958

Intron Length:

4597

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAA|GCACGGGCA

5'SS Class:

major

3'SS Sequence:

CAAGGACGAGGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CAAGCAA

U12 Branch Point Sequence:

TCCTCGGGCACG

Flanking Amino Acid:

PQAYILQVSTKWRQHRAHGH

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.6

0.53

1.2

67.6

34.2

Major BPS

43.7

-0.4

1.3

47.4

Major PPT

39.3

-0.6

1.6

29.3

35.8

Minor 5ss

19.8

-3.5

4.2

29.1

37.5

Minor BPS

34.5

-1.3

2.8

43.08

48.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016846

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043497

34597304 - 34602283

4980