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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34598028_34598103_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34598028 - 34598103
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAG
U12 Branch Point Sequence:
TGGCGCTGAGCT
Flanking Amino Acid:
EPGCRSCACQGGRVLCEAVS
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
75.8
35
Major BPS
46
-0.2
1.6
40.4
42.3
Major PPT
75.9
0.58
0.8
69.8
31
Minor 5ss
45.1
-0.5
2.8
60
44.7
Minor BPS
45.1
-0.2
2.1
63.43
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024381
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019612
34597494 - 34601239
3746
ENSAPLT00000041734
34596537 - 34599993
3457
ENSAPLT00000038832
34596964 - 34599993
3030