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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34598846_34598979_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34598846 - 34598979
Intron Length:
134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGACCC
5'SS Class:
major
3'SS Sequence:
CTCTCCTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
CTGCCCTCAGCG
Flanking Amino Acid:
SPPDCCSCQPAKCSFRGRTY
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
59.5
39.8
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
77
0.61
0.7
68.9
31.6
Minor 5ss
26.4
-2.7
3.1
33.7
41.8
Minor BPS
47.6
-0.3
1.9
53.19
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024381
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019612
34597494 - 34601239
3746