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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34599066_34599201_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34599066 - 34599201
Intron Length:
136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGGGTCTG
5'SS Class:
major
3'SS Sequence:
CCCGTCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCAGCAC
U12 Branch Point Sequence:
GCTGCGTGAGGT
Flanking Amino Acid:
EDDCTTCVCRGGEVECSFAP
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
59.7
46.7
Major BPS
41.5
-0.5
1.3
43
37.8
Major PPT
75.1
0.56
0.8
68.4
31.9
Minor 5ss
30.6
-2.2
3.2
32
42.5
Minor BPS
37.2
-0.8
2.4
52.99
47.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024381
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019612
34597494 - 34601239
3746