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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34600264_34600349_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34600264 - 34600349
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGCAG
5'SS Class:
major
3'SS Sequence:
CTCTCCCTGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAC
U12 Branch Point Sequence:
CAGCCCTCACGT
Flanking Amino Acid:
LDPCLSCICLLGSVACSPVD
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
58.3
42.1
Major BPS
60.1
0.25
1.1
62.9
34.3
Major PPT
72
0.49
0.9
65.2
36.2
Minor 5ss
24.8
-2.9
3
26.2
38
Minor BPS
42.6
-0.4
2
54.56
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024381
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019612
34597494 - 34601239
3746