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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34600441_34600541_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
34600441 - 34600541
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGAGCC
5'SS Class:
major
3'SS Sequence:
CCGGCACCCCTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTGAG
U12 Branch Point Sequence:
CTCCCCGGCACC
Flanking Amino Acid:
PEGECCPVCNDCNYEGRKVV
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
63.4
35.3
Major BPS
55.1
0.13
1.5
54.7
43.1
Major PPT
54
0.09
0.9
43.5
32.4
Minor 5ss
26.7
-2.7
3.2
34.9
41.1
Minor BPS
40.7
-0.7
2.4
52.11
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024381
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019612
34597494 - 34601239
3746