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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34604611_34604725_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34604611 - 34604725
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TCCTCGTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TCTCCATCCACG
Flanking Amino Acid:
TVPATAYVIESDGFCSLGFE
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
78.6
0.64
0.8
72.5
32.3
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
44.1
-0.6
2.2
54.4
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018017
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048518
34604461 - 34606409
1949
ENSAPLT00000046301
34604461 - 34607940
3480
ENSAPLT00000019226
34604461 - 34606684
2224