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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34605055_34605153_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34605055 - 34605153
Intron Length:
99

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGACGCTG
5'SS Class:
major
3'SS Sequence:
CCTGCTATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGCTAT
U12 Branch Point Sequence:
TCGGCGAGAAGT
Flanking Amino Acid:
WQITMERYSRRCQAIVDTGT
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.3
0.27
1.2
51.7
46.6
Major BPS
48.5
-0
1.4
47.8
45.7
Major PPT
77
0.61
0.9
73.3
35.8
Minor 5ss
34.9
-1.7
3.4
47.8
47.8
Minor BPS
36.5
-0.9
2.4
52.97
47.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018017
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048518
34604461 - 34606409
1949