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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34605810_34605960_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34605810 - 34605960
Intron Length:
151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CCCGTACCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGGGAC
U12 Branch Point Sequence:
TCTCCCGTACCC
Flanking Amino Acid:
PSVYCSSRACENHKRFNPSK
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
76.1
33.6
Major BPS
48.6
-0
1.5
48.8
46.3
Major PPT
65.1
0.34
0.9
57.7
32.1
Minor 5ss
32.3
-2
3.3
44.3
43.6
Minor BPS
49.3
-0
2.3
67.56
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018017
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019226
34604461 - 34606684
2224
ENSAPLT00000048518
34604461 - 34606409
1949
ENSAPLT00000046301
34604461 - 34607940
3480