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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34606354_34606628_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34606354 - 34606628
Intron Length:
275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGCGCT
5'SS Class:
major
3'SS Sequence:
TCCCACACCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
CCTCCCACACCC
Flanking Amino Acid:
LVALAQCLPSKIPLRKMKSL
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1
68.6
36.4
Major BPS
50
0
1.2
61.8
35.9
Major PPT
64.6
0.33
0.9
54.6
34.8
Minor 5ss
35.2
-1.7
3.4
48.1
42
Minor BPS
43
-0.5
2
53.02
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018017
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019226
34604461 - 34606684
2224