About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34609064_34609463_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34609064 - 34609463
Intron Length:
400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CCTAAATTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAG
U12 Branch Point Sequence:
TTGCCCTAAATT
Flanking Amino Acid:
PVPAKTYIQQIYLGYCKSGF
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
59.4
0.23
1.5
69.4
37.7
Major PPT
73.3
0.52
1
65.5
39.6
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
66.3
0.59
1.7
81.19
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007772
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008083
34608911 - 34613134
4224