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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34609142_34609805_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
34609142 - 34609805
Intron Length:
664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
AACACATTAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GGGATTTTAACA
Flanking Amino Acid:
IGASEYPSGQDLVLLPDGFE
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
33.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
49
-0
1.1
46.1
38.7
Minor 5ss
24.1
-3
3.2
29.7
43.3
Minor BPS
59
0.28
1.3
61.07
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007772
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035831
34608779 - 34612718
3940