Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34627104_34627209_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34627104 - 34627209

Intron Length:

106

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGGGT

5'SS Class:

strong_major

3'SS Sequence:

GTTCCCTCCGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CAGTAAG

U12 Branch Point Sequence:

CAGTAAGGAGCT

Flanking Amino Acid:

QKSSHLTAYAALEGAARSSN

Intron Amino Acid Position:

592

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

0.9

38.2

Major BPS

46.2

-0.2

1.6

41.5

Major PPT

75.6

0.58

0.8

69.5

31.1

Minor 5ss

25.5

-2.8

3.5

37.8

47.1

Minor BPS

33.6

-1.1

2.2

48.32

43.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018569

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046732

34626156 - 34635216

9061

ENSAPLT00000045708

34626156 - 34631765

5610