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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34634614_34634694_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34634614 - 34634694
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
CTCGTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
TCTGCCTGACGG
Flanking Amino Acid:
EPPEYPSPHHGWPAPSCPQD
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
66.2
39.6
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
71.8
0.49
0.8
65.4
30.5
Minor 5ss
35.7
-1.6
2.9
45.4
42.5
Minor BPS
44.3
-0.5
2.1
51.42
48.7

Associated Gene:

Gene:
CD6
Ensembl Gene ID:
ENSAPLG00000018616
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035189
34634531 - 34639506
4976