Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34648476_34649522_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34648476 - 34649522

Intron Length:

1047

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TGCTCGTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTCAA

U12 Branch Point Sequence:

CAGCGCTCAACT

Flanking Amino Acid:

CMRVCKTWYKWCCDKRLWTK

Intron Amino Acid Position:

929

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

0.9

36.6

Major BPS

58.2

0.2

1.1

37.5

Major PPT

70.5

0.46

0.9

61.3

40.1

Minor 5ss

-2.2

3.2

41.8

Minor BPS

47.6

-0.1

62.89

46.7

Associated Gene:

Gene:

KDM2A

Ensembl Gene ID:

ENSAPLG00000003636

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003742

34647132 - 34682054

34923