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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34651177_34651253_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34651177 - 34651253
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
GCGCTGCTGACT
Flanking Amino Acid:
NEIVHPGCLQMDGEGLLNDE
Intron Amino Acid Position:
662

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81.3
32.8
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
82.1
0.72
0.8
76.1
32.5
Minor 5ss
30.6
-2.2
2.6
36.7
40.4
Minor BPS
40.2
-0.6
2.2
53.28
42.1

Associated Gene:

Gene:
KDM2A
Ensembl Gene ID:
ENSAPLG00000003636
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003742
34647132 - 34682054
34923