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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34660217_34661274_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34660217 - 34661274
Intron Length:
1058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCCCC
5'SS Class:
major
3'SS Sequence:
TCTTTCACGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TCTTTTGTCACT
Flanking Amino Acid:
KDFQKESLSMDMELSSSDSV
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
56.7
42.7
Major BPS
77.7
0.69
1
81
30.2
Major PPT
73.9
0.54
1
70.6
34.8
Minor 5ss
33.3
-1.9
3
35.1
41
Minor BPS
48.3
-0
2.4
74.22
43.6

Associated Gene:

Gene:
KDM2A
Ensembl Gene ID:
ENSAPLG00000003636
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003742
34647132 - 34682054
34923