About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34665922_34666493_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34665922 - 34666493
Intron Length:
572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTCCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TACACCTTATTA
Flanking Amino Acid:
ILEMQYPKVQKYCLMSVKGC
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
28.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
75.5
0.57
0.9
74.7
34.9
Minor 5ss
34.7
-1.7
3.2
43.7
38.1
Minor BPS
58.3
0.26
1.6
65.19
41.4

Associated Gene:

Gene:
KDM2A
Ensembl Gene ID:
ENSAPLG00000003636
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003742
34647132 - 34682054
34923