Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34667460_34667837_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34667460 - 34667837

Intron Length:

378

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGTGTC

5'SS Class:

strong_major

3'SS Sequence:

TCTGTTCTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGACAT

U12 Branch Point Sequence:

GTTCCAGTGACA

Flanking Amino Acid:

FSVNDVRLCVGSRRMVDVMD

Intron Amino Acid Position:

103

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.7

0.89

0.9

33.6

Major BPS

49.9

-0

1.4

60.7

45.9

Major PPT

76.2

0.59

72.9

37.4

Minor 5ss

37.7

-1.4

3.3

53.4

43.8

Minor BPS

47.5

-0.2

2.3

66.31

39.5

Associated Gene:

Gene:

KDM2A

Ensembl Gene ID:

ENSAPLG00000003636

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003742

34647132 - 34682054

34923