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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34667885_34668842_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34667885 - 34668842
Intron Length:
958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
ATTTTTTTAGCA
Flanking Amino Acid:
IFRSSDGLGIKMPDPDFSVN
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.5
28.6
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
80.5
0.69
0.9
74
36.8
Minor 5ss
39
-1.2
3.3
52.8
38.5
Minor BPS
67.9
0.56
1.5
77.09
33.8

Associated Gene:

Gene:
KDM2A
Ensembl Gene ID:
ENSAPLG00000003636
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003742
34647132 - 34682054
34923