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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34730506_34733358_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
34730506 - 34733358
Intron Length:
2853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTCCGTAGC
5'SS Class:
weak_major
3'SS Sequence:
GTAGTCTATGGAG|A
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
TTTTCTTTACTT
Flanking Amino Acid:
GAHTGLNKNNVTEFIL
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.4
0.03
1.4
52.9
44.2
Major BPS
74
0.6
1
65.6
41.1
Major PPT
48.8
-0
1.7
54.9
44.7
Minor 5ss
33
-1.9
2.9
42.9
38.2
Minor BPS
75.9
0.89
1.5
91.31
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000745
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000723
34730488 - 34734282
3795