About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34770985_34771574_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34770985 - 34771574
Intron Length:
590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTACGTTACCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACACAT
U12 Branch Point Sequence:
ATTACGTTACCC
Flanking Amino Acid:
GLLSSISELQHSLSGSAKVK
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
61.1
0.28
1
67
29.8
Major PPT
69.7
0.44
1
62
43.4
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
49.8
-0
2.3
69.42
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004421
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004571
34770396 - 34782699
12304