Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34772891_34773417_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34772891 - 34773417

Intron Length:

527

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCC|GTGAGTCAT

5'SS Class:

major

3'SS Sequence:

TTCTCCTTTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAAAGAA

U12 Branch Point Sequence:

TTCTCCTTTCCA

Flanking Amino Acid:

HSSDPLYTPEPDTCHELLGH

Intron Amino Acid Position:

298

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.7

0.37

1.3

65.3

42.2

Major BPS

50.4

0.01

1.1

47.3

36.1

Major PPT

88.1

0.86

0.7

80.5

31.5

Minor 5ss

32.3

-2

45.7

42.5

Minor BPS

46.6

-0.2

3.6

75.21

42.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004421

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004571

34770396 - 34782699

12304