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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34773554_34774035_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34773554 - 34774035
Intron Length:
482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTGT
5'SS Class:
major
3'SS Sequence:
TGTTCCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TCTACATTAAAC
Flanking Amino Acid:
QLEDVSRFLKERTGFTIRPV
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
72.3
39.7
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
83.3
0.75
0.7
81.5
30.4
Minor 5ss
38.5
-1.3
3.4
56.5
47.6
Minor BPS
59.2
0.27
1.8
69.98
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004421
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004571
34770396 - 34782699
12304