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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34774233_34775716_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34774233 - 34775716
Intron Length:
1484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGCTCA
5'SS Class:
major
3'SS Sequence:
CTTCTCCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
TTTTATCAAGGC
Flanking Amino Acid:
YFADLAMNYKHGDPIPKIEF
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
62.7
38.7
Major BPS
79
0.72
1
80.3
31.7
Major PPT
83.1
0.74
0.7
81.3
23.7
Minor 5ss
46.3
-0.4
2.8
62.6
42.8
Minor BPS
38.2
-0.9
2.3
55.55
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004421
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004571
34770396 - 34782699
12304