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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34775785_34776470_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34775785 - 34776470
Intron Length:
686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTTCTTCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GCTCATTTAATT
Flanking Amino Acid:
YGSDLDADHPGFKDNVYRKR
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
79.3
34.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
86.3
0.82
0.6
85.2
22.3
Minor 5ss
42.5
-0.8
2.8
60.5
37.7
Minor BPS
59
0.36
1.5
70.98
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004421
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004571
34770396 - 34782699
12304