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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34799036_34799555_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34799036 - 34799555
Intron Length:
520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TATTTCTCACTT
Flanking Amino Acid:
LSNMFQELTKENTLEGLNQG
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
85
0.87
0.8
85.6
23
Major PPT
88.3
0.86
0.7
80.5
36.7
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
56.9
0.29
1.8
76.85
40.1

Associated Gene:

Gene:
SAAL1
Ensembl Gene ID:
ENSAPLG00000004998
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005164
34798145 - 34806733
8589