Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34799753_34800764_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34799753 - 34800764

Intron Length:

1012

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGCCAT

5'SS Class:

major

3'SS Sequence:

TACTTTATATCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAA

U12 Branch Point Sequence:

GTTACTTTATAT

Flanking Amino Acid:

TEQEYIKMRKNMPLIGSLIR

Intron Amino Acid Position:

344

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.1

0.69

71.6

40.1

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

75.7

0.58

75.1

38.1

Minor 5ss

41.2

-1

3.2

56.8

41.8

Minor BPS

56.3

0.28

1.7

74.92

41.5

Associated Gene:

Gene:

SAAL1

Ensembl Gene ID:

ENSAPLG00000004998

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005164

34798145 - 34806733

8589