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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34800954_34801087_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34800954 - 34801087
Intron Length:
134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTCAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
TTCTTTCTCAAG
Flanking Amino Acid:
TTVDEGIQAIVQAPDGGKET
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
67.8
37.5
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
80.1
0.68
1
79.5
32.8
Minor 5ss
32.4
-2
3.1
39.7
40.1
Minor BPS
42.7
-0.7
2.1
52.14
42.9

Associated Gene:

Gene:
SAAL1
Ensembl Gene ID:
ENSAPLG00000004998
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005164
34798145 - 34806733
8589