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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34801171_34801454_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34801171 - 34801454
Intron Length:
284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCCTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TGTTTCTTGTTT
Flanking Amino Acid:
PCILEAAKQVRSDNPEGLDV
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
72.7
38.8
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
82.2
0.72
0.8
78.3
30.6
Minor 5ss
32.5
-2
3.2
40.9
45.3
Minor BPS
46.8
-0.1
3.4
78.89
37.8

Associated Gene:

Gene:
SAAL1
Ensembl Gene ID:
ENSAPLG00000004998
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005164
34798145 - 34806733
8589