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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34803156_34803521_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34803156 - 34803521
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGTATA
5'SS Class:
major
3'SS Sequence:
TTTCTATTTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
CTTACCTTAAAT
Flanking Amino Acid:
CMSISKDENLGQVLLQRLCD
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
78
38.6
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
78.1
0.63
1
79
32.3
Minor 5ss
37.5
-1.4
3.1
42.1
44.8
Minor BPS
74.9
0.86
1.4
86.29
39.3

Associated Gene:

Gene:
SAAL1
Ensembl Gene ID:
ENSAPLG00000004998
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005164
34798145 - 34806733
8589