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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34805019_34806275_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34805019 - 34806275
Intron Length:
1257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGGCA
5'SS Class:
major
3'SS Sequence:
ACTTTCTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTCACT
Flanking Amino Acid:
CKVWDMSMDEDVALFLQEFN
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
66.7
39.1
Major BPS
100
1.24
0.5
100
0
Major PPT
78.7
0.65
0.8
72.8
31.4
Minor 5ss
28.1
-2.5
3.6
38.3
46.9
Minor BPS
70.6
0.73
2
93.33
34.8

Associated Gene:

Gene:
SAAL1
Ensembl Gene ID:
ENSAPLG00000004998
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005164
34798145 - 34806733
8589