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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34806011_34807143_R

Intron Information:

Intron Rank:
2
Intron Class:
major_hybrid
Intron Phase:
1
Intron Coordinates:
34806011 - 34807143
Intron Length:
1133

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GTG|GCAATTATG
5'SS Class:
major
3'SS Sequence:
AGCCCGGCACTAG|A
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TGCTCCTTAAGC
Flanking Amino Acid:
IGADKYFHARDEKQVLILHP
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.2
74.3
41.9
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
48.5
-0
1
36.5
34.9
Minor 5ss
29.2
-2.4
3.8
39.3
40.3
Minor BPS
70.7
0.63
1.7
75.07
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005304
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005477
34805790 - 34808047
2258