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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34807225_34807944_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34807225 - 34807944
Intron Length:
720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
GTGCTTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTAAAGTTAACA
Flanking Amino Acid:
GGRFVLDAAGGAWDMLRAYR
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73.2
39.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.8
0.58
0.9
73.8
36.9
Minor 5ss
44.2
-0.6
2.9
59.3
45.5
Minor BPS
51.7
0.05
2.2
70.36
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005304
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005477
34805790 - 34808047
2258