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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34816603_34817085_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34816603 - 34817085
Intron Length:
483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGGA
5'SS Class:
major
3'SS Sequence:
CTTTGTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTTCCCCATGT
Flanking Amino Acid:
SLLKSQPEDKRPSLLRSLLQ
Intron Amino Acid Position:
740

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.4
39.3
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
84.8
0.78
0.7
80.6
31.4
Minor 5ss
27.9
-2.5
3.5
38
46.8
Minor BPS
47.2
-0.1
2.3
77.09
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005319
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005518
34814087 - 34828945
14859