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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34817242_34817389_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34817242 - 34817389
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCCAAG
5'SS Class:
major
3'SS Sequence:
TGTCTCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CCTTTCTGAAAA
Flanking Amino Acid:
DGPLLLVHAQRLYEKFGETA
Intron Amino Acid Position:
688

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.1
0.38
1.3
59.7
46.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
84
0.77
0.8
81.4
30.7
Minor 5ss
42.9
-0.8
3
56.4
48
Minor BPS
57.2
0.22
1.6
64.83
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005319
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005518
34814087 - 34828945
14859