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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34820202_34820934_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34820202 - 34820934
Intron Length:
733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
TGTATTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAA
U12 Branch Point Sequence:
CAATGCTTCAGT
Flanking Amino Acid:
SLVASPQEERVSEPQSCQLP
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
69.7
36.3
Major BPS
57
0.17
0.9
65
30.8
Major PPT
81
0.7
0.9
73.6
41.7
Minor 5ss
32.6
-2
2.7
35.6
40.5
Minor BPS
44.4
-0.3
2.4
61.37
48

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005319
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005518
34814087 - 34828945
14859