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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_34821082_34822726_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34821082 - 34822726
Intron Length:
1645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGATTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CGTGTTTGAACT
Flanking Amino Acid:
PLVSLQAVKESVSSFVRKTT
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
84
27.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
78
0.63
0.9
70
40.5
Minor 5ss
43.2
-0.7
3.3
64.8
46.5
Minor BPS
53.7
0.19
1.6
68.54
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005319
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005518
34814087 - 34828945
14859